GetDist: a Python package for analysing Monte Carlo samples
Antony Lewis
Abstract
Monte Carlo techniques, including MCMC and other methods, are widely used in Bayesian
inference to generate sets of samples from a parameter space of interest. The Python
GetDist package provides tools for analysing these samples and calculating marginalized
one and two-dimensional densities using Kernel Density Estimation (KDE). Many Monte Carlo methods
produce correlated and/or weighted samples, for example produced by MCMC, nested, or importance
sampling, and there can be hard boundary priors. GetDist's baseline method consists of
applying a linear boundary kernel, and then using multiplicative bias correction. The smoothing
bandwidth is selected automatically following Botev et al. [1], based on a mixture of
heuristics and optimization results using the expected scaling with an effective number of samples
(defined here to account for both MCMC correlations and weights). Two-dimensional KDE uses an
automatically-determined elliptical Gaussian kernel for correlated distributions. The package
includes tools for producing a variety of publication-quality figures using a simple
named-parameter interface, as well as a graphical user interface that can be used for interactive
exploration. It can also calculate convergence diagnostics, produce tables of limits, and output
in latex, and is publicly available.
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