Seeking and mapping coral reef biological hotspots with an autonomous underwater vehicle

Dataset associated with McCammon et al. "Seeking and mapping coral reef biological hotspots with an autonomous underwater vehicle", Science Robotics. Associated data processing code is available at https://gitlab.com/whoi-smart-lab/papers/science_robotics_2025 Organization data.zip - ZIP archive containing all data required to reproduce Figures 1-7 JS_cross_survey audio_samples - folder containing .wav files used to detect fish calls js_orthomosaic_cross.png - raw PNG orthomosaic reconstruction from Joel's Shoal Cross Survey summary.csv - CSV File containing metadata for audio samples, including timestamp and position JS_grid_survey acoustic_map.csv - 2m resolution acoustic heatmap used to compute multimodal regressions fish_census.csv - CSV file containing raw data from fish census including position, time, and fish counts with various YOLO thresholds audio_samples - folder containing .wav files used to detect fish calls js_orthomosaic_grid.png - raw PNG orthomosaic reconstruction from Joel's Shoal Grid Survey js_rigosity.csv - 2m resolution rugosity map used to compute multimodal regressions js_rugosity_mesh.fbx - RAW mesh used to compute rugosity summary.csv - CSV File containing metadata for audio samples, including timestamp and position JS_homing js_homing1.mp4 - Downward-facing video from Joel's Shoal homing experiment 1 js_homing1_odom.csv - CSV file containing vehicle odometry from homing experiment 1 js_homing2.mp4 - Downward-facing video from Joel's Shoal homing experiment 2 js_homing2_odom.csv - CSV file containing vehicle odometry from homing experiment 2 JS_tracking 2022-11-03-barry-joelshoal-timesynced-with-autonomous-labels.mp4 - Timestamped video of full barracuda track with annotation to show manual/autonomous modes js_orthomosaic_tracking.png - raw PNG orthomosaic reconstruction from Joel's Shoal barracuda tracking experiment tracking_odom.csv - CSV file containing vehicle odometry from barracuda tracking experiment Lameshur_homing lameshur_homing1_odom.csv - CSV file containing vehicle odometry from lameshur homing experiment 1 lameshur_homing2_odom.csv - CSV file containing vehicle odometry from lameshur homing experiment 2 lameshur_homing3_odom.csv - CSV file containing vehicle odometry from lameshur homing experiment 3 lameshur_homing4_odom.csv - CSV file containing vehicle odometry from lameshur homing experiment 4 lameshur_homing5_odom.csv - CSV file containing vehicle odometry from lameshur homing experiment 5 lameshur_homing6_odom.csv - CSV file containing vehicle odometry from lameshur homing experiment 6 lameshur_homing7_odom.csv - CSV file containing vehicle odometry from lameshur homing experiment 7 scripts.zip - ZIP archive containing all code required to reproduce Figures 1-7. This is an archival snapshot of the code available on gitlab as of the publication date. Gitlab should be checked for the most up-to-date version as dependencies may receive updates/changes to APIs. reference README.md for installation/usage instructions Videos S01-S02 - Supplementary Videos. Video S01 - Video showing fish census with overlaid YOLO bounding boxes Video S02 - Video showing barracuda track with overlaid KeepTrackFast bounding box, timestamp, and vehicle mode Data Videos data01 - data11 - Other videos data01 - Downward-facing video from Joel's Shoal homing experiment 1 data02 - Downward-facing video from Joel's Shoal homing experiment 2 data03 - Manually-annotated diver video P7260010 used in Table S2 data04 - Manually-annotated diver video P7260012 used in Table S2 data05 - Manually-annotated diver video P5090348 used in Table S2 data06 - Manually-annotated diver video P5090349 used in Table S2 data07 - Manually-annotated diver video P5090350 used in Table S2 data08 - Manually-annotated diver video PA230380 used in Table S2 data09 - Manually-annotated diver video PA230381 used in Table S2 data10 - Manually-annotated diver video P1010039 used in Table S2 data11 - Manually-annotated diver video P1010041 used in Table S2 data12 - Manually-annotated diver video P1010042 used in Table S2