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Abstract
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, RCSB.org), the US Worldwide Protein Data Bank (wwPDB, wwPDB.org) data center for the global PDB archive, provides access to the PDB data via its RCSB.org research-focused web portal. We report substantial additions to the tools and visualization features available at RCSB.org, which now delivers more than 227000 experimentally determined atomic-level three-dimensional (3D) biostructures stored in the global PDB archive alongside more than 1 million Computed Structure Models (CSMs) of proteins (including models for human, model organisms, select human pathogens, crop plants and organisms important for addressing climate change). In addition to providing support for 3D structure motif searches with user-provided coordinates, new features highlighted herein include query results organized by redundancy-reduced Groups and summary pages that facilitate exploration of groups of similar proteins. Newly released programmatic tools are also described, as are enhanced training opportunities.
Academic Publication Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank
Research Abstract & Technology Focus
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RCSB protein Data Bank: exploring protein 3D similarities via comprehensive structural alignments
Abstract Motivation Tools for pairwise alignments between 3D structures of proteins are of fundamental importance for structural biology and bioi...
Generalized biomolecular modeling and design with RoseTTAFold All-Atom
Deep-learning methods have revolutionized protein structure prediction and design but are presently limited to protein-only systems. We describe RoseTTAFold All-Atom (RFAA), which combines a residu...
The structure assessment web server: for proteins, complexes and more
Abstract The ‘structure assessment’ web server is a one-stop shop for interactive evaluation and benchmarking of structural models of macromolecular complexes including proteins and ...
Bilingual language model for protein sequence and structure
Abstract Adapting language models to protein sequences spawned the development of powerful protein language models (pLMs). Concurrently, AlphaFold2 broke through in protein struct...
Accurate structure prediction of biomolecular interactions with AlphaFold 3
AbstractThe introduction of AlphaFold 21 has spurred a revolution in modelling the structure of proteins and their interactions, enabling a huge range of applications in protein modelling and desig...
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What is the core focus of the research titled 'Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank'?
This literature focuses on: Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, RCSB.org), the US Worldwide Protein Data Bank (wwPDB, wwPDB.org) data center for the global PDB archive, provides access to the PDB data ...
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What other academic literature is closely related to 'Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank'?
Yes, highly correlated activity was mapped. An entry titled 'RCSB protein Data Bank: exploring protein 3D similarities via comprehensive structural alignments' discusses this: Abstract Motivation Tools for pairwise alignments between 3D structures of proteins are of fund...
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