← Back to Research Radar
Academic Publication Academic Publication

The UCSC Genome Browser database: 2025 update

551
Citations
January 6, 2025
Published Date

Research Abstract & Technology Focus

Abstract
The UCSC Genome Browser (https://genome.ucsc.edu) is a widely utilized web-based tool for visualization and analysis of genomic data, encompassing over 4000 assemblies from diverse organisms. Since its release in 2001, it has become an essential resource for genomics and bioinformatics research. Annotation data available on Genome Browser includes both internally created and maintained tracks as well as custom tracks and track hubs provided by the research community. This last year's updates include over 25 new annotation tracks such as the gnomAD 4.1 track on the human GRCh38/hg38 assembly, the addition of three new public hubs, and significant expansions to the Genome Archive[GenArk) system for interacting with the enormous variety of assemblies. We have also made improvements to our interface, including updates to the browser graphic page, such as a new popup dialog feature that now displays item details without requiring navigation away from the main Genome Browser page. GenePred tracks have been upgraded with right-click options for zooming and precise navigation, along with enhanced mouseOver functions. Additional improvements include a new grouping feature for track hubs and hub description info links. A new tutorial focusing on Clinical Genetics has also been added to the UCSC Genome Browser.
Read Full Literature

AI Semantic Synergy Context

Connecting this academic literature to real-world market discussions and products.

crossref.org › academic paper
30%
🔥

The UCSC Genome Browser database: 2025 update

Abstract The UCSC Genome Browser (https://genome.ucsc.edu) is a widely utilized web-based tool for visualization and analysis of genomic data, encompassing over 4000 assemblies from ...

crossref.org › academic paper
0%

WebGestalt 2024: faster gene set analysis and new support for metabolomics and multi-omics

Abstract Enrichment analysis, crucial for interpreting genomic, transcriptomic, and proteomic data, is expanding into metabolomics. Furthermore, there is a rising demand for integrat...

crossref.org › academic paper
0%

OrthoDB and BUSCO update: annotation of orthologs with wider sampling of genomes

Abstract OrthoDB (https://www.orthodb.org) offers evolutionary and functional annotations of orthologous genes in the widest sampling of eukaryotes, prokaryotes, and viruses, extendi...

crossref.org › academic paper
0%

The GSA Family in 2025: A Broadened Sharing Platform for Multi-omics and Multimodal Data

Abstract The Genome Sequence Archive family (GSA family) provides a comprehensive suite of database resources for archiving, retrieving, and sharing multi-omics data for the globa...

crossref.org › academic paper
0%

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2025

Abstract The National Genomics Data Center (NGDC), which is a part of the China National Center for Bioinformation (CNCB), offers a comprehensive suite of database resources to su...

Frequently Asked Questions (FAQ)

Curated market intelligence mapped to this research.

What is the core focus of the research titled 'The UCSC Genome Browser database: 2025 update'?

This literature focuses on: Abstract The UCSC Genome Browser (https://genome.ucsc.edu) is a widely utilized web-based tool for visualization and analysis of genomic data, encompassing over 4000 assemblies from diverse organisms. Since its release in 2001, it h...

Are there open-source GitHub repositories related to The UCSC Genome Browser database: 2025 update?

Yes, open-source projects like CoderLuii/HolyClaude (AI coding workstation: Claude Code + web UI + 5 AI CLIs + headless browser + 50+ tools) are actively building upon these concepts.

Which startups are commercializing the technology behind The UCSC Genome Browser database: 2025 update?

Products like HelixDB are bringing this to market. Their focus is: An open-source OLTP graph-vector database built in Rust..

What other academic literature is closely related to 'The UCSC Genome Browser database: 2025 update'?

Yes, highly correlated activity was mapped. An entry titled 'The UCSC Genome Browser database: 2025 update' discusses this: Abstract The UCSC Genome Browser (https://genome.ucsc.edu) is a widely utilized web-based tool for visualization and analysis of gen...

Cite this Market Intelligence Report

Reference our AI-mapped synergy between this research and the commercial market to instantly build authority.

Commercial Realization

Startups and Open Source tools heavily associated with the concepts explored in this paper.

Enterprise Ecosystem Mentions

  • Opera
    developer of the Opera browser

Associated Media Narrative