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Networks as tools for defining emergent properties of microbiomes and their stability

165
Citations
September 28, 2024
Published Date

Research Abstract & Technology Focus

AbstractThe potential promise of the microbiome to ameliorate a wide range of societal and ecological challenges, from disease prevention and treatment to the restoration of entire ecosystems, hinges not only on microbiome engineering but also on the stability of beneficial microbiomes. Yet the properties of microbiome stability remain elusive and challenging to discern due to the complexity of interactions and often intractable diversity within these communities of bacteria, archaea, fungi, and other microeukaryotes. Networks are powerful tools for the study of complex microbiomes, with the potential to elucidate structural patterns of stable communities and generate testable hypotheses for experimental validation. However, the implementation of these analyses introduces a cascade of dichotomies and decision trees due to the lack of consensus on best practices. Here, we provide a road map for network-based microbiome studies with an emphasis on discerning properties of stability. We identify important considerations for data preparation, network construction, and interpretation of network properties. We also highlight remaining limitations and outstanding needs for this field. This review also serves to clarify the varying schools of thought on the application of network theory for microbiome studies and to identify practices that enhance the reproducibility and validity of future work.
networks tools defining emergent properties microbiomes
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What is the core focus of the research titled 'Networks as tools for defining emergent properties of microbiomes and their stability'?

This literature focuses on: AbstractThe potential promise of the microbiome to ameliorate a wide range of societal and ecological challenges, from disease prevention and treatment to the restoration of entire ecosystems, hinges not only on microbiome engineering but also on ...

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What other academic literature is closely related to 'Networks as tools for defining emergent properties of microbiomes and their stability'?

Yes, highly correlated activity was mapped. An entry titled 'Networks as tools for defining emergent properties of microbiomes and their stability' discusses this: AbstractThe potential promise of the microbiome to ameliorate a wide range of societal and ecological challenges, from disease prevention and treat...

Are there commercial applications of 'Networks as tools for defining emergent properties of microbiomes and their stability' in market news publications?

Yes, highly correlated activity was mapped. An entry titled 'Emergent spatial structure in the gut microbiota is driven by bacterial growth and gut contractions' discusses this: Spatial structure shapes microbial community function, but how it emerges in the gut is unclear. This study shows that bacterial growth in the visc...

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